Scaffold Ga0193162_1055166

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193162_1055166

Scaffold Ga0193162_1055166

Overview

Basic Information
Taxon OID	3300018872 Open in IMG/M
Scaffold ID	Ga0193162_1055166 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000196 (ERX1789513-ERR1719216)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	776
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_025
Coordinates	Lat. (^o)	39.4046	Long. (^o)	19.3886	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075672	Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193162_10551662	F075672	N/A	ATIDPDQAWNIAPNKDYNTLSWYSTADGSFEKRLARESPVDSFTGLNWDKIPNGANEYYGFTQAPMFKYEFDETEYYTNLTPTKTDEQVKAELNEPVVKMEEKLQEFLDKGEEVLWTPAMEVMQTNCAVPAARALQYEISPYFQLNALGYRKNWANTRLCEYRPFKRMQCNWLNVTADYLFRFQMMRWNLSSKMKMRWWKMCMSGGFVGLCIDHIYARQYKRKLKWH

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