NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192891_1048204

Scaffold Ga0192891_1048204


Overview

Basic Information
Taxon OID3300018884 Open in IMG/M
Scaffold IDGa0192891_1048204 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000709 (ERX1789629-ERR1719186)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1101
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean: TARA_068
CoordinatesLat. (o)-31.0507Long. (o)4.6603Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014356Metatranscriptome263N
F035620Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0192891_10482041F035620GAGGMSYGGVIGRPGWSVVGSCLVVYKRRLSMCNMLVVDCSYRSCMVDLLVVMVGSDRGSDDGSLVASVAMADTGERASHSVGCVEVTLRAGQGSQAGADKQDRLMTEHG
Ga0192891_10482042F014356GAGGVPTLETKCDQEDGGQALELRTEEECQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVEPHWAEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCALEPVLEPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVEKGEPACQETLLQLPQQACLQKIERVNTVYTAPEKVSYSG
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