Basic Information | |
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Taxon OID | 3300018887 Open in IMG/M |
Scaffold ID | Ga0193360_1003703 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001826 (ERX1789534-ERR1719462) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2897 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | South Pacific Ocean: TARA_111 | |||||||
Coordinates | Lat. (o) | -16.9554 | Long. (o) | -100.6911 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F085090 | Metatranscriptome | 111 | N |
F094857 | Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0193360_10037032 | F094857 | GGA | VKLVARALLEPLACPDKKAPMDQGDPQAKEDHQELKVCQAWRAAREPLVLMDQTDRLDHLDLAGLLGIEEFLVFQALLAQLEQQANKDHKEKGEILASQESKAPRDHLGLLVLLGLLVSVVSEVRRVHQESRELPGWVAGLVIRVHLEQQE |
Ga0193360_10037033 | F085090 | AGGAG | VCQDLLGWLASLDQLASLDPLVYRAALERLDHRDNPEPRAIAVSLAFRVFLDPSDLKDRRDLQAKMERMESQVRWAGVVLPDLMDPWVVWATLVLLDQEDHRARKAREVHLASLVLLGLLALQARATEWTWLP |
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