Scaffold Ga0193360_1035796

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193360_1035796

Scaffold Ga0193360_1035796

Overview

Basic Information
Taxon OID	3300018887 Open in IMG/M
Scaffold ID	Ga0193360_1035796 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001826 (ERX1789534-ERR1719462)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1237
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_111
Coordinates	Lat. (^o)	-16.9554	Long. (^o)	-100.6911	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F096558	Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193360_10357961	F096558	N/A	LLLLDSLLQERCLAIQVLVILEQGPHLELQGVAIQALELLGAILDSLEEDTPGSNPDKELLGEDTQGLAHLAPQVPLVDTQDKVLQVEDIQALVPLEAVTLVQEGLHQELPKVVILEALQGVLQVATQEVHLEAIQASKVPILEQQHLRLLTLRWSNGSEQLTRITPARLTPRSLARLLPMGTEACSVRRLAGR

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