NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193304_1000296

Scaffold Ga0193304_1000296


Overview

Basic Information
Taxon OID3300018888 Open in IMG/M
Scaffold IDGa0193304_1000296 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001648 (ERX1789571-ERR1719332)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3805
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_102
CoordinatesLat. (o)-5.2669Long. (o)-85.2732Alt. (m)Depth (m)40
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085090Metatranscriptome111N
F094857Metatranscriptome105N
F104391Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0193304_10002963F104391AGGVDQRASLVKEECPASLALLDQEVKMVLKDQMVNLDHLDPRELLDTKDPLGWLVYLVSEEFQGLKVLRGEEVIQAFLDQLVLMAEQAREVNKGLLVLQDPLERLEVLEIQGRQGLSENRDQLV
Ga0193304_10002965F094857GGAGVKLDQEECLEIWDHLVGLENLECLEKLADRALLEHLECPVRRAQMDQEDPQAKEDHRELKVCQAWKAVRELLVLMDQMDRLDHLDLMDLLGIEEFLVYQVLLAQLEPQANKDLKEKGEISASPESKALRDHLGLLVLPVLLESEVSGVRRVLQENRELQGWAVDLVTRVHLVQQE
Ga0193304_10002966F085090AGGAGVCQDLLGWLAALDQLASLDPLVYRAVLERLDHRDSLEPRATAVSLVFRVFLDPLDLKDRRDLLAKMERTESQVQWADAVLQDLMDPLVLWATLVLQDQEDHQARKAREVHLESLDLLGLLALQARAMEWTWLP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.