NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192965_1002074

Scaffold Ga0192965_1002074


Overview

Basic Information
Taxon OID3300018896 Open in IMG/M
Scaffold IDGa0192965_1002074 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001362 (ERX1789685-ERR1719483)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5405
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_084
CoordinatesLat. (o)-60.2584Long. (o)-60.6226Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094857Metatranscriptome105N
F104391Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0192965_10020745F104391N/AMKENEDQQASLEKGECPVSLDPLDQEVKMVRKDQMVNLDHLDPRDLLDTKDPLGWLVCLVSEEFLGLKVLRVEEVIRAFLDQLVLMAEQARGVNKELLVLQDPLGRLEVLEIQGRQGLSENRGQLV
Ga0192965_10020747F094857GGAVKLADRALLDPLGCPVKRVQMDQEDPQAKEDHRDLKACQAWKAEREPLVLTDQMDRPDHLDPVDLLGIEEFLVYQALLAQQEPQANKDHKEKGEILASLESKALRDLLDLLVLLGLLVSEASGVRRVHQESRELQGWAVDLVTRVHRVQQE
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