Basic Information | |
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Taxon OID | 3300018902 Open in IMG/M |
Scaffold ID | Ga0192862_1036236 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000790 (ERX1789490-ERR1719234) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1252 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: TARA_066 | |||||||
Coordinates | Lat. (o) | -34.9363 | Long. (o) | 17.9366 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014356 | Metatranscriptome | 263 | N |
F035620 | Metatranscriptome | 171 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0192862_10362361 | F014356 | GGAG | VDYVEEPAEVCVPTLETKCDQEDGGQTLELRTEEKCQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVEPHWAEVCHQETICLNHAKPSYGAPPAYCHEEIHETCALEPALVPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVEKGEPACQETLLQLPQQACLQKIERVNTVYTAPEKVSYSG |
Ga0192862_10362362 | F035620 | AGGAG | MGNWGVIGNWSGWSVVGSCLLVMDKGRLSVGNMLVVDWSRMVDLMDLVDWSRMVDLMDLVGGDGGSYDSSLVGSVTMADTGERASNSVGGVEVALGAGQGSQAGADKQDRLMTEHGCPSSNLNRLSNRGRGRSLSFYRPQPARRWGLPL |
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