Scaffold Ga0193598_1032135

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193598_1032135

Scaffold Ga0193598_1032135

Overview

Basic Information
Taxon OID	3300018910 Open in IMG/M
Scaffold ID	Ga0193598_1032135 Open in IMG/M
Source Dataset Name	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	QB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1299
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location Name	USA: Utah, Colorado Plateau, Green Butte Site
Coordinates	Lat. (^o)	38.712053	Long. (^o)	-109.695097	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029653	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193598_10321353	F029653	GGCGG	MTVPDRVGTITGYRVWRVLPGQWVAPSDSLHAQTCQRSWSTTGPTLAYCPPHAQVDPNKPLMVNGPCEESPGFGCACGLYARYEPIEEEHLLPYVVGSVLAWGRVVHHAERSFFRAEKALPVAFVRPRGGSGMFPKEAEEKLYRIVEALGAGMVEDPKELRTYTEEESRKW

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