NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193611_1006080

Scaffold Ga0193611_1006080


Overview

Basic Information
Taxon OID3300018917 Open in IMG/M
Scaffold IDGa0193611_1006080 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 0 min after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4790
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0193611_10060804F001042GGAGMTFTDDSLCGRSQDLTCAEASDKIVIDKLLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAQYSISSKNDTARREFTEKSALLLESYQEAVPKSLVKAESCLGEAIDLINLIVSASEAGVNNE
Ga0193611_10060806F083444GAGGMLNNISEVFSLEEVALENSDLLPKYGKKVVYFVTAMQGESKIFLYIGITVDLRMKFKNHSRKIEFEFLKRIGYQINICWIVFPDRTSQKKIQAIQTSYVQIFEPKLNDDQNTFAAVQVEEKKKRVENWEQSRYEYLKKKVEKWEQSGDDKETIIKKIWEVCKQPFDDKHLILSSCKPQKTAV
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