NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190273_10399566

Scaffold Ga0190273_10399566


Overview

Basic Information
Taxon OID3300018920 Open in IMG/M
Scaffold IDGa0190273_10399566 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)966
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038469Metagenome / Metatranscriptome166N
F074494Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0190273_103995661F038469GGAGGMAALSCTCEQGTNLWGEFWWIEGEHRWVFFDDEKTSETYAEQLTHCPECGRSLERKALRATTPSLLS
Ga0190273_103995662F074494N/AAREQEAYYAIGELTQEERRDLRGEPLSKSLGETLGEMLDGMRRQRTDDLAAAKRLDLPRVDKPGSLRLRKARQSQPENYQNRGRRSNKVEHMSEDAQVLIRAAREVHVERHGAQTFLPGTYLSLLEAAKRTGIRSDRQRYHDALEDLEYEGAIEWDTSARYARGDKHYLITRRGVDEPGRAMGGAARKGQARLF
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