NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190273_10506288

Scaffold Ga0190273_10506288


Overview

Basic Information
Taxon OID3300018920 Open in IMG/M
Scaffold IDGa0190273_10506288 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090904Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0190273_105062881F090904N/AKDRIQGRPGEQYKVRIAVTPDAPEGLLNAPIRVATGVTQQPTVEIPVSGIIRPRVSITPVTVNFGNFTAGKDPITRNIIVTNNKPGQPVKVMRAEVSVPGFVTDIVPTQEGVSYTVVVKASGNVKKGALDGMVKLFTSDKERSVIEIPLRGEVL
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