NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193260_10048517

Scaffold Ga0193260_10048517


Overview

Basic Information
Taxon OID3300018928 Open in IMG/M
Scaffold IDGa0193260_10048517 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001111 (ERX1789573-ERR1719386)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)915
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NamePacific Ocean: TARA_093
CoordinatesLat. (o)-33.9116Long. (o)-73.0537Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030404Metagenome / Metatranscriptome185Y
F062799Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0193260_100485171F030404N/AMILVVLCTSALAFAPPRRGPRLAPLAYGRRDDYERWQSTADALTAWRGDKETVAKFWRIDCDDDGFTWERRWPGRESQIEDFAWERITRVCWECGEWLMMDNFYLIADNEDSEWVVPSGALNYQRLVDVLDRKGLFSTKTYVECQCVSEGGFTICEANPNATAPAPRANLPYVDSDAQKAAFKKRAHWGQ
Ga0193260_100485172F062799N/AKGCPKRITMGNIAARQASRSIYHDPSIRRALQLRGFATATRYGFIKGTGSGLRPAQKKAQAPNPQLRVALQQRYGELALQKKPQDSGKVRQLVASTGAAYRAPACDPWARGQLFR
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