Scaffold Ga0193379_10068021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193379_10068021

Scaffold Ga0193379_10068021

Overview

Basic Information
Taxon OID	3300018955 Open in IMG/M
Scaffold ID	Ga0193379_10068021 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001972 (ERX1789369-ERR1719393)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	999
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Ixodinae → Ixodes → Ixodes scapularis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_123
Coordinates	Lat. (^o)	-8.9068	Long. (^o)	-140.283	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002147	Metatranscriptome	589	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193379_100680211	F002147	N/A	SHRVNISTMSAKCVAAALLLASSAVSGARVRRDDGYGAPEPDTYGAPAETYGAPVDSYGASAPSYGAETGLDLTTIIIPLLALLGLFLLFPTYVTLTSVRRKREAIDDSEVSVNAVERMMDMYQAVIESEECLERVACDVGAMASDAGLDTSLASMASIMVPNKYSKYMKQFATAKNCHKIKCGNLF

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