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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018958 Open in IMG/M |
| Scaffold ID | Ga0193560_10007186 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_144 - TARA_N000003191 |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2528 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | North Atlantic Ocean: TARA_144 | |||||||
| Coordinates | Lat. (o) | 36.345 | Long. (o) | -72.7586 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F055392 | Metatranscriptome | 138 | N |
| F064373 | Metatranscriptome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193560_100071862 | F055392 | N/A | MGFIQEVFDSRAEKLVEVMDKLEKAIGQVMADKIYTSNEFKKVKENFSNLAKNLEHSEVKDWLQSTRETLQAGGGAKGKGGEGDKLNDVLERFDKLVPKVTETHKIADSLWQGYNYTDELTPHVEWLEEKKTLANRDINSNSGAETEDLIEKQEKVIDQLDKKRKVFQAVLDKGTKLVSGPRCPEFLGREVKRATDLWKETNSQALDRLQRLKENQSAWERYENKRNDLTGKLESADGELEDIRKLYDLAAGTEDHKRRLQTAASIRKEIDSVFTAVKEANEIVQVLLTEDMKTVLNDQVEELRQRSTVNDNIDEKLKTIDSFNGKLKIYIGVVDQLEKWNDEGRKRMEELLNPETPFQAEDKVLMTMELGEDISKQLEITESQQSLWNSELGPSKATETSPESKTLETRMEAVKEKLTGLNSQSETEAAKFGEDVKHLADVTNSTKKFNPWVEKSEAKVKAGMRKADSLEDGKVLLEEINKWAGADCEFKPVSFSFTASIQSH |
| Ga0193560_100071864 | F064373 | GGA | MKTTLDNGNTAAQKMTTHGEADKTYAENIKKWELVDRAIKEWKAKMEALVKMWEEQAATADKVTNAISDPSASDMKLEDLEAHLNSLKAMFIEKQKMMDAMNQPAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |