Scaffold Ga0193087_10107513

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193087_10107513

Scaffold Ga0193087_10107513

Overview

Basic Information
Taxon OID	3300018964 Open in IMG/M
Scaffold ID	Ga0193087_10107513 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000939 (ERX1782328-ERR1712130)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	900
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Indian Ocean: TARA_065
Coordinates	Lat. (^o)	-35.2421	Long. (^o)	26.3048	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005390	Metatranscriptome	402	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193087_101075131	F005390	N/A	KRAFDGALPTVPVYDAKKAEDKTYAEATSCQTGHKMVSGGDGTSSHEWPDWPEQLHYKAKAHGAYPFWWGGGSDSGDADMEVYWSEKFGAEKFIHSSCTGQSSWLSGPCTHLLFADGPVGYMYTQDESKCCLTEPSSGGGGSGPSETLAPSQGTFWNTFTYKGEVDFNGVYYQGKAKYYVLTGVNEPVREFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTIWHDYDPSSLDSSAFDTSVFDIPAACKTTTLTCAFP

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