Scaffold Ga0193562_10123322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193562_10123322

Scaffold Ga0193562_10123322

Overview

Basic Information
Taxon OID	3300018965 Open in IMG/M
Scaffold ID	Ga0193562_10123322 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_149 - TARA_N000002141
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	743
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	North Atlantic Ocean: TARA_149
Coordinates	Lat. (^o)	34.0823	Long. (^o)	-49.8695	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004380	Metatranscriptome	440	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193562_101233221	F004380	N/A	LKLTLQVERGTFIVPSFDEIWPQPGKERAGKARTRMGYDYILEAMQHHGLGHLPQPDNFTTCGRLGIEVNQYNNPIEVYSDDTIEDMREEKVVLDHPEVADKLLKSNAKKHEHQMNPIAAQKLKADKFDPKRSSVMAAINASERPSGIPGV

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