Basic Information | |
---|---|
Taxon OID | 3300018973 Open in IMG/M |
Scaffold ID | Ga0193330_10083869 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001742 (ERX1789408-ERR1719300) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1054 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | South Pacific Ocean: TARA_109 | |||||||
Coordinates | Lat. (o) | 2.0574 | Long. (o) | -84.5546 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F044283 | Metatranscriptome | 154 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0193330_100838691 | F044283 | AGG | MPRPVLVSLAMGLPGVLAGGPAVPVLPGNDSCAEILAAANVTGRFAAAVAHGIHDITVEDLREFKGDVPCAGNGVPTVNRDLRSESAVLPSAPCLDDGDSPFATPAMRVVDAALTRMDDMNYDIGTTSGLQRLVHAFHMREVWALASAQYQALAADPPGRAACACALDVDGNSVLEELRLIASSLRSAQMASSRQSSIQLGWHHFGWSKSCLRPAALRGAADLLDLGRIRSAADWAMWKATMAEHMALCDTRDLAVFLYCTLNREAAQPHN |
⦗Top⦘ |