NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192873_10009760

Scaffold Ga0192873_10009760


Overview

Basic Information
Taxon OID3300018974 Open in IMG/M
Scaffold IDGa0192873_10009760 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000809 (ERX1782160-ERR1711971)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2475
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_066
CoordinatesLat. (o)-34.9449Long. (o)17.9189Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093339Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0192873_100097601F093339N/AVILSNILFYNLTNKLKLRTPTLKKEKFYIKNLLNQTIYLKKLKKNGSTRNLNKKEFISFSSKKINLKDFTVAYIISISFLKANIIIHVSDTQGKLKLFYSVGSIINLHGKQKRKRQVAISKLIFLVLKKAAFISKTNCFTFKQRKLL
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