Scaffold Ga0193353_10077281

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0193353_10077281

Scaffold Ga0193353_10077281

Overview

Basic Information
Taxon OID	3300018977 Open in IMG/M
Scaffold ID	Ga0193353_10077281 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001816 (ERX1782322-ERR1711977)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1001
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_111
Coordinates	Lat. (^o)	-16.9587	Long. (^o)	-100.6751	Alt. (m)		Depth (m)	90
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000287	Metatranscriptome	1370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193353_100772812	F000287	N/A	LYRMGESGGGSLTGPRLHRFQAQDFKMTAGGAWRRPRMKVYDYNQEFGGNYYQPMIQYINHKDIYGPFSKKADVYLPHSAEVTSAKYTNMRYNDKSSAKHNLDQFLVDAHKTQIKELNGTTAMARVNLMKNIVTSRRQPHTPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIVKTGNHKLDTKYRKHLAMVEACEDEYDYHHKLFGQGAVDRDFQFHNPQLVKDYVNQIRRV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.