NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192947_10040141

Scaffold Ga0192947_10040141


Overview

Basic Information
Taxon OID3300018982 Open in IMG/M
Scaffold IDGa0192947_10040141 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001384 (ERX1782271-ERR1711935)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1412
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_082
CoordinatesLat. (o)-47.2007Long. (o)-57.9446Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000820Metagenome / Metatranscriptome878Y
F010838Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0192947_100401411F000820GGAVSSLLGENVTLGALKNLITDKPAPITTKLAQKSDGSIVSSLLGENVTLGALKNLLTDKPAPITTKLAQKSDGSIVSSLLGENVTLGALKNLITDKPAPITTKLAQKSDGSIVSSLLGENVTLGALKNLLTDKPAPITTKLAQKSDGSIVSSLLGENVTLGALKNLLTDKPAPITTKLAQIEKSDGDNLSSLLGENITRGALKNLVTDKPAPITLKLAQLKQLQ
Ga0192947_100401412F010838N/AVSALLGENITLGALKNLVTDKPAPITTKLAQKSDGSIVSALLGENITLGALKNLVTDKPAPITTKLA
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