Scaffold Ga0193257_10032331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193257_10032331

Scaffold Ga0193257_10032331

Overview

Basic Information
Taxon OID	3300018997 Open in IMG/M
Scaffold ID	Ga0193257_10032331 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001303 (ERX1789387-ERR1719468)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1547
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Pacific Ocean: TARA_092
Coordinates	Lat. (^o)	-33.6771	Long. (^o)	-71.9719	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012746	Metatranscriptome	277	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193257_100323312	F012746	GGAGG	MVESDIAEARPATGVSRKVLGAAAAVGLFCAGGWAGEHFSARGPAMQSHAGENMQELTQIIAKPERDLCSKTTDDCFATGCCNVVGYNCFTTKPNQARCMKNCTPSTFQSCTQPQPIMDPILQEAVPVGQKMYCFSVYTENTGSTKQSHELEILQHQFSQQLGIFQCEESDVFSDVSVEVGGGMMTTVVTPAEDDWHFAKRKVSGTWVNTGMFTQIWKKIAEGAKYQTTDWVMKLDADAIFIPSRMRVWLKQNELVPPAGVYLENCKYVDYGYFGNLEVYSREAFTTLIRNIDTCKTSINWKLGVQNGKWGPMGEDLFAQTCLDSVGVRRKEAFDITTDGACPADRPKQEEKNKKWKPNCASTATPAMHPFKKTQEWVQCYEATTAAFGA

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