Scaffold Ga0193514_10146945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193514_10146945

Scaffold Ga0193514_10146945

Overview

Basic Information
Taxon OID	3300018999 Open in IMG/M
Scaffold ID	Ga0193514_10146945 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003100 (ERX1782275-ERR1712038)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	862
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Gulf of Mexico: TARA_142
Coordinates	Lat. (^o)	25.5921	Long. (^o)	-88.4388	Alt. (m)		Depth (m)	125
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004781	Metagenome / Metatranscriptome	423	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193514_101469451	F004781	N/A	DNVWIQGRYLPTKVTSGLGVTKSIAVGGPFLKGHKLRVEVRSASWDGQPVLTGFPSDFSVPGVIDMHYNNVGTLLQNGREGKALHIVHIRLEDGSPEGLRIQVNRWMEPAEGDYMNVKIVMHGQKGQDGHCGNFNANPQDDDRLQVRARVGKTGVDPKDSMYATKTPVMVANRPNINDCPAQQLEDAKTLCKQKEKKFIPSMACLIDVCFAGKGFAATG

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