Basic Information | |
---|---|
Taxon OID | 3300019007 Open in IMG/M |
Scaffold ID | Ga0193196_10437655 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000011 (ERX1782393-ERR1712012) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 541 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Indian Ocean: TARA_039 | |||||||
Coordinates | Lat. (o) | 18.5667 | Long. (o) | 66.522 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003008 | Metatranscriptome | 513 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0193196_104376551 | F003008 | N/A | SYGGSSSAPQYKCKRTPETKCYTTPRTVSSEYCEERDEEVCEKLTERVPVPQEKQVCHDEKKKVCELEQRSQPKQVKKYVYTKQCRPVPKTVCDNADQKSLVPSCVPSSRKECSYKPQERCENVPKQHCYQIPYQVKKMECTDGGSQGGYGSQDEGASGY |
⦗Top⦘ |