NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193043_10222226

Scaffold Ga0193043_10222226


Overview

Basic Information
Taxon OID3300019012 Open in IMG/M
Scaffold IDGa0193043_10222226 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001426 (ERX1809764-ERR1740129)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)736
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_081
CoordinatesLat. (o)-44.5582Long. (o)-52.2718Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012948Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0193043_102222262F012948N/ALGLAKNRLNQFYNPKLYKPAAKAELSAQERILVSEGGTASPTPAPGGIAGTGVTVFADISAHDQLSSKAAPPPPPATWDAYSKKSGESTGVIAMIDLLVKDLTKEMTEGKTTEADAQADYEQMMKDMAEKRVEDSEALAEKQAAKAGLESDLAALNDEHSAATKELAATLQYIASLHAECDWLLKYFDVRKEARSGEIDSLVSAKAVLSGADYAFVQVSRSYLRGNH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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