NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193545_10049020

Scaffold Ga0193545_10049020


Overview

Basic Information
Taxon OID3300019025 Open in IMG/M
Scaffold IDGa0193545_10049020 Open in IMG/M
Source Dataset NameMetatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399745-ERR1328126)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)871
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean: TARA_151
CoordinatesLat. (o)36.1715Long. (o)-29.023Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F082388Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0193545_100490201F082388N/AGFGLPGIIGQVGKSLFKSPGSSALTGFGVGTIVDFFFDEFGQQKKLTITRKMQRDVKKLFMMSGGNFNVTAELYRMATGRSITGEQVVKIITKTFKNQGPYVTKAAVRKTTKTIRKMETLCDLKDRLCPPKRRAPARRRTTSQMITQVK
Ga0193545_100490202F001607AGGMPVLANNVSLTAGSSSSNLFDNTNYQFVNEGTAIRIYGAVVGANDGIQAANVNYRFTINNTEFADDATVPALVTGQPFTGVDGGPYLLNSVIATGQARNRPLVVFRNQTSGTLVVKFFIFISQQV
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