Scaffold Ga0192905_10017717

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192905_10017717

Scaffold Ga0192905_10017717

Overview

Basic Information
Taxon OID	3300019030 Open in IMG/M
Scaffold ID	Ga0192905_10017717 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000666 (ERX1789399-ERR1719153)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1828
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Atlantic Ocean: TARA_070
Coordinates	Lat. (^o)	-20.4035	Long. (^o)	-3.1859	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079406	Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192905_100177171	F079406	GAG	VAAAGLVDHLTSAASIEEQQLVLIQTLCPATEDPKGCEEGVKQWWGDMAGCLYPHFIGADDACQKLGLCTKNKMVPQPKEWTCEECTAIMGQVGGFLVDEVVVAEAVEYLQGECFCGKPGHSAECGDLVSQLLPQAMKILAGVLSKTAVHLCQEVVGVC

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