NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192905_10059710

Scaffold Ga0192905_10059710


Overview

Basic Information
Taxon OID3300019030 Open in IMG/M
Scaffold IDGa0192905_10059710 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000666 (ERX1789399-ERR1719153)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean: TARA_070
CoordinatesLat. (o)-20.4035Long. (o)-3.1859Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014356Metatranscriptome263N
F035620Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0192905_100597101F014356GGAGVDYVEEPAEVCVPTLETKCDQEDGGQILELRTEEECQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVEPLWTEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCALEPVLEPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVEKGEPACQETLLQLPQQACLQKIERVNTVYTTPEKVSYSG
Ga0192905_100597102F035620GAGGMSYRSMIGRPGWSVVGSCLVVDKRRLSMCNMLVVDCSYRSCMVDLVVVGSYRGSDDSRLVAMADTSERATNSVGCMEIALRTDQGSQAGADKQDRLMTEHGCPSSNLNRLSNRG
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