Scaffold Ga0193558_10345397

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193558_10345397

Scaffold Ga0193558_10345397

Overview

Basic Information
Taxon OID	3300019038 Open in IMG/M
Scaffold ID	Ga0193558_10345397 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_143 - TARA_N000003141
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	543
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	North Atlantic Ocean: TARA_143
Coordinates	Lat. (^o)	29.6721	Long. (^o)	-79.5929	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006688	Metatranscriptome	366	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193558_103453971	F006688	N/A	QGSNAPMYELPSGSFTFYYLELALEAKLQRKVNQLKEILSKSKGQIQYDWRGAQYIQSKEQFIDWKRSMGSKRPGKRPTGPREVLDTFKAVTMTEEDLKDEGRTKVTSKTVSERTWYTPEAWEHGGLRIKNEVKDEMEEGMDDGPQKKKVKKEAAK

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