NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192992_10209663

Scaffold Ga0192992_10209663


Overview

Basic Information
Taxon OID3300019054 Open in IMG/M
Scaffold IDGa0192992_10209663 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001590 (ERX1782183-ERR1711964)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)638
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_097
CoordinatesLat. (o)-25.8076Long. (o)-111.6906Alt. (m)Depth (m)488
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027099Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0192992_102096631F027099N/AMGVYFILVLILIMMSSILGLLLLSLSQVCVCQEFSWGASDYYMGWSGGYSWEQSRDKCKARGSGWDLAAIETSTENRGLEKILLDYCEVEQGDLALCCFLLGGYDINSSTDMKLTTGEAASYFNWSGYYEEPNDTPGSCLYMCVENYFGISGEWGDKSCSETGTTKYLCEKS
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