NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188868_1000108

Scaffold Ga0188868_1000108


Overview

Basic Information
Taxon OID3300019077 Open in IMG/M
Scaffold IDGa0188868_1000108 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS695_0p8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2354
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020903Metagenome / Metatranscriptome221N
F080238Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0188868_10001083F080238GAGMEEKLTEFEKMLRELENKVVPERTCNIDDENCESCSG
Ga0188868_10001085F020903N/ALEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLQKSIRMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGVRKSGDKKGQPWEIKAPNSPYQFKKGPKVSHVKAWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGEAFDKFKTEIRIVSGERVAKGLKEILKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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