Scaffold Ga0188854_1003269

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0188854_1003269

Scaffold Ga0188854_1003269

Overview

Basic Information
Taxon OID	3300019083 Open in IMG/M
Scaffold ID	Ga0188854_1003269 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Baltic Sea - GS680_3p0_dT
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	835
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	56.1664	Long. (^o)	16.378218	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000342	Metatranscriptome	1262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188854_10032691	F000342	N/A	AAQSFSLHYQRPSLVWFLVVLGFGCVAVAAFLAVRTKQRERDPMWYTFATLALLVAVVTATIFGNMNFWYNMQPFYDIENLNEYPSVNPAREKGQQLMDAGRVYFADGTGIDMSKAMGFKNLDLYCVAPIVHGEEQLASYDFWAVGINCCSGVSSDFRCGEFNNPHARSGLRLMRDDQRPFFRLAVQQSEAAYNIKATHPLFFYWMQDPVAEMNSYRDDGFKYYLLGIFTHFAFNLFCVVCAVVGFSKIGRY

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