NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187843_10086783

Scaffold Ga0187843_10086783


Overview

Basic Information
Taxon OID3300019093 Open in IMG/M
Scaffold IDGa0187843_10086783 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1427
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F008741Metagenome328Y
F086724Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0187843_100867831F086724GGAGMASIEREVENALLNVVSGVTGVNFFTSERGTARTMPSVTVQAQIGSEELIPFSGVFKTPASITYVARADTTARTAFDAKFYDILEQLYRSPD
Ga0187843_100867832F005584AGGTGGMAGSIPTSYFATDLSNMIQDLYQSVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0187843_100867833F008741GAGMSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFEMTSYVKAGHRQGDVIDLEIWPNQYEAYRKSKISWTDFVYSHPEIKDADNTNIVLDKLDEKPSEGLPEFYNLVAPFGVSQGQYRNPLEIIVRARQAMGKDNFFVLCPAEIKIQGLSTYTAPSVEQMAKAIRGATEFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFNFEGMITMD
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