Basic Information | |
---|---|
Taxon OID | 3300019094 Open in IMG/M |
Scaffold ID | Ga0193040_1007870 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001489 (ERX1809466-ERR1739840) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 668 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Atlantic Ocean: TARA_080 | |||||||
Coordinates | Lat. (o) | -40.6241 | Long. (o) | -51.9229 | Alt. (m) | Depth (m) | 85 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F043755 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0193040_10078701 | F043755 | GGAG | MNVQSGGSFDDALSLFGRDSFGDFASPLPVAHHQTVEFVNVVDQEFFEAHMVSASVPGVLVGTITNTWVTSLTAESSSEGTIDTFGSSPAAVSDSDEPVDLVSGEFLVSLFEKGVFADSFLGHFVGVF |
⦗Top⦘ |