NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188859_1004253

Scaffold Ga0188859_1004253


Overview

Basic Information
Taxon OID3300019098 Open in IMG/M
Scaffold IDGa0188859_1004253 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007947Metagenome / Metatranscriptome342Y
F035125Metagenome / Metatranscriptome173N

Sequences

Protein IDFamilyRBSSequence
Ga0188859_10042531F035125AGGAGMKTAKKKITVRFVVEQDFEVEVRDSDLGMGSFFAIGDVMVSSGFDQWDVLTHEFIFDNPVGDMRPVHDGHLSDANLYNLGLHSEYIQPWLFEGETDKDPYEDEEMENE
Ga0188859_10042533F007947N/ATILCLQNQMPDVGMDDLFIIGYLAIGTAIVIYLVMDALKEN

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