NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188859_1011571

Scaffold Ga0188859_1011571


Overview

Basic Information
Taxon OID3300019098 Open in IMG/M
Scaffold IDGa0188859_1011571 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002733Metagenome / Metatranscriptome534Y
F011124Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0188859_10115711F002733AGGAGMTKDNTLWIQLTPIQANALMVMLDSEMQTWHDYGGGIDLKEWETLDLEAYKILAYHKFKTWYEENCSE
Ga0188859_10115712F011124AGGAGMFDPDKTYGATVWDLSIAVVDFEADDYVRNEDGSIKLFTLPNHDYSYICDDIDVHNLQERDKGDDYDD

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