NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193499_1024676

Scaffold Ga0193499_1024676


Overview

Basic Information
Taxon OID3300019130 Open in IMG/M
Scaffold IDGa0193499_1024676 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002942 (ERX1782241-ERR1712112)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Pacific Ocean: TARA_137
CoordinatesLat. (o)14.2005Long. (o)-116.7031Alt. (m)Depth (m)40
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014356Metatranscriptome263N
F035620Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0193499_10246761F014356GGAGVDYIEEPAEVCVPTLETKCDQEDGGQTLELRTEEECQDVVRTVCVERHNVVDNEVCAFSYTLHPVPTEAKLVEPIWAEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCALEPVLEPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCSVEKGEPACQETLLQLPQQACLQKIERVNTVYTTPEKVSYSG
Ga0193499_10246762F035620GAGGMSYGGMIGRPGWSVVGSCLVVDKRRLSMSNMLVVDCSYRSCMVDLVVVGSYRGSNDGRLVAMADTGERATNSVCCVEVALRTDQGSQAGADKQDRLMTEHGCPSSNLNRLSNPHVLCVD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.