Scaffold Ga0193246_10193002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193246_10193002

Scaffold Ga0193246_10193002

Overview

Basic Information
Taxon OID	3300019144 Open in IMG/M
Scaffold ID	Ga0193246_10193002 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001503 (ERX1789695-ERR1719376)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	675
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Saprolegnia → Saprolegnia parasitica	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Atlantic Ocean: TARA_080
Coordinates	Lat. (^o)	-40.6487	Long. (^o)	-52.1511	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000406	Metagenome / Metatranscriptome	1172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193246_101930021	F000406	N/A	ICGPPPKGTGLQNLRECVIETKWKYDVATEDKQVAWKHLILSFMERYFYLICFATYAMEYGPGGYQKTFVSWMDENKDLRVMIEEGKDKLEWYRTVDPQKLEHLKELISAPNYKENLGVLIRTIYDFAFVTYADLPRGPIKNNSMRRLAATTLMDILPTEIAERVNKKMEEDPSSTHDFLTLVGLVSYYGSDE

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