NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192888_10010168

Scaffold Ga0192888_10010168


Overview

Basic Information
Taxon OID3300019151 Open in IMG/M
Scaffold IDGa0192888_10010168 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000705 (ERX1789682-ERR1719501)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2649
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean: TARA_068
CoordinatesLat. (o)-31.0551Long. (o)4.668Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085090Metatranscriptome111N
F094857Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0192888_100101681F085090AGGAGVVCQDLLGWLASLDQLASLDHLVYRAALERLDHRDNLEPRATAVSLAFRVFLDPLDLKDRRDLQAKMERTESQVQWAGAVLQDLMDPLVVWATLVNQDQEDHQARKAREVHLASLVLLGLLALQARAMEWTWLL
Ga0192888_100101682F094857GGALADRALLERPGCLVKRAQMDQEDPQAKEDHRELKACQAWKAVRDPLVLMDQMDRLDHLDLMGLLGIEEFLVYQVLLVQLELQANKDHKEKGEILASQESKALRDHLGLLVLPGLLESEVSGVRRVHQESRELQGWAVDLVTRVHLVQQE
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