Scaffold Ga0193564_10000277

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193564_10000277

Scaffold Ga0193564_10000277

Overview

Basic Information
Taxon OID	3300019152 Open in IMG/M
Scaffold ID	Ga0193564_10000277 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_150 - TARA_N000002717
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5396
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	North Atlantic Ocean: TARA_150
Coordinates	Lat. (^o)	35.8605	Long. (^o)	-37.178	Alt. (m)		Depth (m)	40
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193564_100002775	F104391	N/A	MKENEGQLASPVKEECLVNSDPLDQEAKMDLKDQMVSLDHLDPRDLPDTKDPLGWLVYLVSEEFLALKVLRVEEVIQAFLDQLVLMAGLARGVNKALLVPQDPLGKLEVLEIQGRQDLLVNRAQLV
Ga0193564_100002776	F094857	AGG	VSLVCLVKLADRALLDLEVCLDKRALMDQGDLQAKEDHQDLKACQAWKAVREPLVLMDQTDRLDHLDLMDLLETEGFLVYQVLLAQLDPQGSKDLKEKGETLASQESKVLRDHPDLLVLLGLLVSEVSGARRVHQESRELLAWEVGLVTRVHLVQQE
Ga0193564_100002777	F085090	AGGAG	VCQDLLGWLASLDQLASLDHLASRAALERSDHQVNLERRATAVSLASRVFLDPSDPKDKRDQQAKMERTESQVQWADVVLQDLMALWVVWATLVLRDPGGHQAKKVREVHLESLVLLDLLGLQARAMEWTWLP

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