NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192975_10024643

Scaffold Ga0192975_10024643


Overview

Basic Information
Taxon OID3300019153 Open in IMG/M
Scaffold IDGa0192975_10024643 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001019 (ERX1789708-ERR1719469)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1815
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_085
CoordinatesLat. (o)-62.2024Long. (o)-49.2382Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029646Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0192975_100246431F029646N/AVQAPCPFTLVFIVIRIVSSAMAFIAIASLVSVVCAKSFLQPEVGRQSIEGALLSELSGMADAAQLQAIDQELGTMYHSLPKNEHGRLDPDTVRYALHRYFMKKHGWYVNGLGVVNATDDTSSTTIMKDRAPSYIQKMFEERLQGQGLNRHDLAVFAATLTDLVHKEVAVALEGVYAELELPTVGPVTEKEHGIATKAYLVTYIAGGTGEDATMLDLPAAEGEDYLAWEETLLWSTDLELTSDFSSRHRLNPFTRQRRSFDGHVSLLEEFGHRLGTFQNLECHRLKDLLVDMEDPGTGRVPLSRFYRGGLDGDWTFTESVDYLRHVGALDETSPSRPSVVIPNYIQSHSNCLEGSSFYSVCCFDECEGLLGHVEHAVQEPNALPARVAEVVSGLGSDTVHAPRNLSGTLLSRLGQIAELHGGHVPLHGRLFAQWMHHAYPRECLSPHFSGGVNRLSPLEWMDIHEIDSAAASEEEMALHVNADAVDGFLELRGESLPWTLTEELVAGHAVSDIPPTTLSRVLRVVVGVFALLSMTVPVSRAGIVASPKDSDRVTRCLV
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