NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180033_171908

Scaffold Ga0180033_171908


Overview

Basic Information
Taxon OID3300019198 Open in IMG/M
Scaffold IDGa0180033_171908 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - R8.48AS metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)969
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.232Long. (o)-123.89Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006742Metatranscriptome365N

Sequences

Protein IDFamilyRBSSequence
Ga0180033_1719081F006742N/AHDMMKKIHKDMMVMNSMTACWGKGDMMLYKMAIWEATEQCMQENHSNLLKPANPILSLLNQETETLPFPVNNNNPFLSSSKLQNNPFKSSRVSNSKLNAWQNIWNNGRSKRQVEGLLQPTEEDFKEFLADFEDFKGDIASKMGNLTCVMKKMDMLDNNLQVNMKAYSGDMWNKIDLSQTMAGEDAEWRDMLETHYKDCYDIARSFPQSALNRNPLTKVFGRHMVFFKCAKKAEAKCCGMACANDMLETLYGRNDNYDWTQHGMPANKYERAAWTMKVMYGTASPEEGAIHEFFFSDPMM

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