NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187789_1201686

Scaffold Ga0187789_1201686


Overview

Basic Information
Taxon OID3300019199 Open in IMG/M
Scaffold IDGa0187789_1201686 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)561
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000734Metagenome / Metatranscriptome915Y
F004925Metagenome / Metatranscriptome418Y
F026580Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0187789_12016861F000734AGGAVKTFRNAGDVKNGTAGLRTKGNLRVKRRDPWHRANVPSKAGADPA
Ga0187789_12016862F026580GGCGGMRNRFEPDQVTQAGFGLERIAVTQRVSGCYCASARTDDSGGPRKGVSQTKDAERRDKVSVRPGKDTRSRQDP
Ga0187789_12016863F004925N/ALRRVVAINRSVLNVSRILPDDWGKAESGWLAWPLLSRTARFGGGGRIHQFLWRRSRAVSNANQEPGGEER
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