NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180032_1126140

Scaffold Ga0180032_1126140


Overview

Basic Information
Taxon OID3300019201 Open in IMG/M
Scaffold IDGa0180032_1126140 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - R6.10AS metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.183Long. (o)-123.19Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081389Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0180032_11261401F081389N/AMKLAIILISCIAAISCIRTGTTGLREGETLVEGFLWGRTDDSTRRYECQYVSDMQILSCFRGLVECETIAHFEDLSQNYEIFGIGSTDMIRFHLYPRNFSESTFRDYRVPTTTGGLTELSLYATGEQPVTTGRGLMVRDAVCFKRIVDMWRIIDNQVMVELSNRQRVTMLGYINYLSTETLRVQREQNNGTLPFGSSLGKNLDLDIGRRFDRVEVGNVVAGNPFLAPVSGAIWGTLEDSNRRFECQYSAELMTLTCFRGLIRRETVPHLTELTQSYEIFGLGTTDLTTYRLYPRNFTDVTFTDYRVPGVGGRTVELSLLRSGVEGQGLCVRDAVCYQRIVDMLKVITEPVMVDVTGDNTNTKIQMMGYIINV
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