NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179942_1189846

Scaffold Ga0179942_1189846


Overview

Basic Information
Taxon OID3300019219 Open in IMG/M
Scaffold IDGa0179942_1189846 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC052_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1401
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)42.12Long. (o)-87.65Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023862Metagenome / Metatranscriptome208N
F036250Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0179942_11898461F023862N/AGLSPDIEMKVLSWVGKILPFISDMPIEVIESLMPTDRWVILKSLMHIVSGIYLQIPYDLNPDKLSDIFLVEGDLYHVPTVRRVYNKDIYFSAFNFKTFSELLEIQQLSDNIVKNAAMLCALVLRKSDDKEQLTEDEKLRRAELFSNISMLDFWRVFFR
Ga0179942_11898463F036250N/AMSKRISLKDSYSKLYKLLTNYMYQQAVYFREDNPFLNHTRINPAVSKVVFWIKPPAIESLPAEGLHWRVPAIVAAGNLTTVLTVIDDFINNYSQASYWRNIRPLPASEIGIWDGWEAVAVDFYIDWNHICETEI
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