NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179957_1025195

Scaffold Ga0179957_1025195


Overview

Basic Information
Taxon OID3300019222 Open in IMG/M
Scaffold IDGa0179957_1025195 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNTR4_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan: Hyogo Prefecture
CoordinatesLat. (o)34.65Long. (o)135.05Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067770Metagenome / Metatranscriptome125N
F078767Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0179957_10251951F067770N/AGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGYHLPKREHFGFNKTDGNKYLEKIAKLQTIKNKKANR
Ga0179957_10251952F078767AGAAGGMTNQITGITDEILTALREAGCRTVGILPEVLMFSGNNNPFGFIMLNSETTENDNGGILTQLLDISIFIITQNGINKMKEHCNVLYAAIGKILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR
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