NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179952_1045149

Scaffold Ga0179952_1045149


Overview

Basic Information
Taxon OID3300019235 Open in IMG/M
Scaffold IDGa0179952_1045149 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR1_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)996
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan: Gunma Prefecture
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023320Metagenome / Metatranscriptome210N
F087074Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0179952_10451491F023320N/ALSGLGKEQWIQQELDYDTIAQNLIDTLVEVMREKDVEASSNLIQSLEPETKSGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFVPASKKHALSIAKWLEFRGFATEFTTLADAYRVATATKIKGIRGRKFVEEFEKEIDKIEII
Ga0179952_10451492F087074GAGMIQGVYFFRKDGEEIGSPLPAFDDLFLQIESNNTSAGLYFVVDFVNDYSSKKLTIKLYPKIAQNIVETYISQILRNLFNSNFDTYSTSFTIREYDESGYIGIYDNGVYVIPSIYNSFLPPIKNYYFYYYSASDSDKFSKIDNIIWYKDDYTYLGDGVKINTSLKNIYKKVGTVYEKIIRIHHKQV
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