NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179952_1184309

Scaffold Ga0179952_1184309


Overview

Basic Information
Taxon OID3300019235 Open in IMG/M
Scaffold IDGa0179952_1184309 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR1_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1662
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan: Gunma Prefecture
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057301Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0179952_11843091F057301AGGAGGMRDSIPGTPNLFGAPKDNDDEFSVDLSEAPTGGGYLIPDGDYPAILVDLRKGFSKSGNPQWVWTFAIMSGEHAGKEFSLFTALTPSALWKVAETVEALGLGKGGTASKFTKNEALSRRCIISIQKETYNGQERSSIAKVLPHPDGPGPVTGFNPKKASDSPVPF
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