NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181510_1367039

Scaffold Ga0181510_1367039


Overview

Basic Information
Taxon OID3300019240 Open in IMG/M
Scaffold IDGa0181510_1367039 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)732
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000817Metagenome / Metatranscriptome879Y
F003269Metagenome / Metatranscriptome496Y

Sequences

Protein IDFamilyRBSSequence
Ga0181510_13670391F003269GGAGVKTRIRIHRRVFTWFVSRWRNHQFKQAEKPHSKFSARKTLDGPATRPKTPLAV
Ga0181510_13670392F000817N/ALRWMEAVNRLKPEVSRIIPGDWGKAEPGWLARPLLSRIARFGSGGRIHQFL

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