NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172287_1250392

Scaffold Ga0172287_1250392


Overview

Basic Information
Taxon OID3300019246 Open in IMG/M
Scaffold IDGa0172287_1250392 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3778
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3778Long. (o)-82.5111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092306Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0172287_12503923F092306AGGAGGMTMPATFYEGTDWEQSSEPFIGIDAQESDCWPVDDRSVGGAKDTLSDSKHPIVAIGGRTAADGRPLNLTGVVVSFSGTDDSGTATDRVVINAHALAIVRQYISNILTYGSDGDPATFETAPVPWQPVFVDDSAALSNGVTCSLSPLNSAGLRNPLAGWLTYCQDEIADGIAAGARATSTFDTSLANAETEQIYCVMLSGGGRELA
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