Scaffold Ga0180117_1163068

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180117_1163068

Scaffold Ga0180117_1163068

Overview

Basic Information
Taxon OID	3300019248 Open in IMG/M
Scaffold ID	Ga0180117_1163068 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	963
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9228	Long. (^o)	-106.9513	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003624	Metagenome / Metatranscriptome	476	Y
F006838	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180117_11630681	F006838	N/A	WVLFKHNPYPEVAKGLAEYWMAPENLRVMIEEGDGRWGPPYKGMYDSDFWKRPVFQHWRVILDRGRQFPDPGKWSMAAGEVVASNVLARMIQRVLVENWEAEKAVEEAHKKVVEIYARSE
Ga0180117_11630682	F003624	GGAGG	MLTRRDILQQTGRAAVIMATTAPWWLVRHAHAARQHKLVVWNTTALAPQVDKIMQEQCYAYAKQAGIKDNEIDYSIIGSAQITPKLVASLEAGNPPDIARLDA

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